rs259078254 SNP Detail

Summary

• ID
  rs259078254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:57171462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCT AACAGCTTGT CAATTTGAAC
  Y
  TAGCTTGTTT CACTGAAGAT AAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325201070	CHEV_16_57351212	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259078254					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:57171462 () rs orientation: forward

Symbol	Name	Function Class
Cmss1	cms small ribosomal subunit 1	within coordinates
Filip1l	filamin A interacting protein 1-like	1914 bp upstream
Rr517286	regulatory region 517286	1575 bp distal
Rr517287	regulatory region 517287	1056 bp distal
Rr517288	regulatory region 517288	1545 bp proximal
Tssr138825	transcription start site region 138825	1672 bp upstream
Tssr138826	transcription start site region 138826	1714 bp upstream
Tssr138827	transcription start site region 138827	1883 bp upstream
Tssr138828	transcription start site region 138828	1907 bp upstream
Tssr141600	transcription start site region 141600	521 bp upstream