rs259083995 SNP Detail

Summary

• ID
  rs259083995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128582791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGAACAA ACAGATACGG
  GCTGGTAGGC TTGGGCCAGA ATGGTTGCCT GACTTAATGC TAGCTACACT CTAGGTTCCA
  CTCCCCAGCA TCCCTCCCTC CACCATACCC AAATGCAGGA GGAAGCAAAG GCATAGGTGA
  GGGATTATCA CACACACAAA GTGAGGGATT AGAAGTATAC ATGTAGCCGG GCCGTGGTGG
  Y
  GTACACCTTT AATCCCAGTA CTTGGGAGGC AGAGACAGGC AGATTTCTGA GTTCGAGGCC
  AGTCTGGTCT ACAAAGTGAG TTCCAGGACA GCCAGGGCTA TACAGAGAAA CCCTGTTTCG
  AAAAAAAAAA AAAAAAGAAA AGAAAAGAAA GAAGTATACA CGTGTAAAAA CATGTAGTGC
  ATGCAAATAG CATTAAAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323535819	CHEV_10_128183978	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259083995					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128582791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	780 bp proximal
Gm31504	predicted gene, 31504	1040 bp downstream
Gm66065	predicted gene, 66065	573 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	967 bp upstream
Rr224483	regulatory region 224483	590 bp distal
Rr224484	regulatory region 224484	409 bp proximal
Rr385481	regulatory region 385481	403 bp upstream
Rr402364	regulatory region 402364	1973 bp downstream
Tssr96441	transcription start site region 96441	1899 bp downstream
Tssr96442	transcription start site region 96442	1688 bp downstream
Tssr96443	transcription start site region 96443	448 bp downstream
Tssr96444	transcription start site region 96444	866 bp upstream
Tssr96445	transcription start site region 96445	928 bp upstream
Tssr96446	transcription start site region 96446	1579 bp upstream
Tssr96447	transcription start site region 96447	1829 bp upstream
Tssr99950	transcription start site region 99950	1864 bp upstream
Tssr99951	transcription start site region 99951	1841 bp upstream
Tssr99952	transcription start site region 99952	1837 bp upstream
Tssr99953	transcription start site region 99953	1800 bp upstream
Tssr99954	transcription start site region 99954	1456 bp upstream
Tssr99955	transcription start site region 99955	1423 bp upstream
Tssr99956	transcription start site region 99956	670 bp upstream
Tssr99957	transcription start site region 99957	610 bp upstream
Tssr99958	transcription start site region 99958	706 bp downstream
Tssr99959	transcription start site region 99959	798 bp downstream