rs259089776 SNP Detail

Summary

• ID
  rs259089776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:25689608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTCAGGC CTGTTATTCT
  TTGAGGAGGC AGGATCAGTT CAAGGCCAGC CTGGGCTATC TGAGAGCCTG TCTTTTTTTT
  TTTTTTTTTT TTTTTTTTTT TAAGTGTGAC AAAAAAAGAT TTCCATTAAT TTAGTGGGCC
  AGAGGCATTG AGAATTAAAG GGCGGGTACT AGGTTCGGAT GGGGGTGGGG TGGGGGTAGA
  R
  AGGACAGTAT GTGAACCGGA TTTTCTTGGT TAGACTGAAG GGTTCCCCGC TGGTCCATTG
  TGGGAGAGAA AAGCAAGCAA TTTTGAAACT GCCTAACACT GCTAACTCAA AAATCAACTC
  TTACCTATAA TTTGGTGTCT AGCCACACCC TTGTAGAAAA CAACTAGTCT CTGAAATCTT
  TGAGGCCAAA TCTAAAACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373997346	MGP_WTSI_8_26310064	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259089776					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373997346	MGP_WTSI_8_26310064	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25689608 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20180	CpG island 20180			963 bp proximal
Rr661072	regulatory region 661072			637 bp distal
Rr661073	regulatory region 661073			1847 bp proximal
Tacc1	transforming, acidic coiled-coil containing protein 1			Intron
				Noncoding-Transcript-Variant
Tssr76673	transcription start site region 76673			736 bp downstream
Tssr76674	transcription start site region 76674			866 bp upstream
Tssr76675	transcription start site region 76675			1862 bp upstream
Tssr80693	transcription start site region 80693			1723 bp downstream
Tssr80694	transcription start site region 80694			1757 bp downstream
Tssr80695	transcription start site region 80695			1944 bp downstream