rs259090723 SNP Detail

Summary

• ID
  rs259090723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16359460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC CTGCTCCACC TTTCCTTTTA TCTGCCTAAT CATCAGCTCT TCTTTATTTT
  ACAAATTAAG GTGGGAAGCA GGTTTACAGG AAGTCACCTG AGTGCTCATT CCTTGTTCAC
  AACCACTCAA GGGAGAACAG AATTAATATC AAATATAATT AGTAGTCTAT CCACAACCGG
  Y
  GTCAGCCATT CAAAGTGCAG AAGGAAAACT CAACATCGAT GACTGTCCCA TTAATTTTTC
  ATTAGGAAAC CACTCTTTTA AACTTGATGT AAATACTCTA GATACACAGA TTGAGATGTA
  ATTGAGGATT TAAAACACTC TTGGTAGAGC AAAAATAAGA GAATTACAGT CTTAAGTCTG
  GTTGGCAAGA GGACATCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353207006	MGP_WTSI_2_16276276	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259090723					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353207006	MGP_WTSI_2_16276276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16359460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	1130 bp proximal
Plxdc2	plexin domain containing 2	1655 bp upstream
Rr372823	regulatory region 372823	965 bp upstream
Tssr16298	transcription start site region 16298	988 bp upstream
Tssr16299	transcription start site region 16299	1361 bp upstream
Tssr16300	transcription start site region 16300	1386 bp upstream
Tssr16301	transcription start site region 16301	1431 bp upstream
Tssr16302	transcription start site region 16302	1438 bp upstream
Tssr16303	transcription start site region 16303	1625 bp upstream
Tssr16304	transcription start site region 16304	1645 bp upstream
Tssr16305	transcription start site region 16305	1674 bp upstream
Tssr16306	transcription start site region 16306	1716 bp upstream
Tssr16307	transcription start site region 16307	1801 bp upstream
Tssr16308	transcription start site region 16308	1932 bp upstream
Tssr16309	transcription start site region 16309	1976 bp upstream