rs259094371 SNP Detail

Summary

• ID
  rs259094371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:84565739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGCTCAG ACCGCAGCAG
  GAGGATCAGT GGGTCCCTGA GTCTGGCATA GCGCCTGCTG CCCTTTGCAG ACTGTGGCAC
  CAACAACCTT GTCGTCATAT AACAGCACAT TCACAGGCTC TGCTGGTCCG TGGATAGTTT
  CTTTAACACC TATGCCCCTC GGTTCCTTTG ACCCTTTCTG TTCTTCTGGA ATAAGATAGT
  Y
  ACTCAACGCT TTCTTGAGAA GTAAACTGTA GACTAAAGTC AGGGATAGCA GGTCGCTTTG
  AGATCTCAGA GAATCAAAGA ATTTGACTGT TGGCATTTGT ACTAGGCTAG GCACTCTATA
  CTACATGAAG ACTTAATTCA TTTATTTCAG TGATAGAATA CTTTAGTATT GAAATTACGT
  AATGGGAAAA CATGCAGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321595494	CHEV_5_84846905	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259094371					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:84565739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16022	CpG island 16022	1098 bp distal
Cpgi16023	CpG island 16023	41 bp distal
Epha5	Eph receptor A5	498 bp upstream
Gm42163	predicted gene, 42163	within coordinates
Gm71976	predicted gene, 71976	within coordinates
Rr613965	regulatory region 613965	1085 bp distal
Rr613966	regulatory region 613966	1271 bp distal
Rr613967	regulatory region 613967	414 bp distal
Rr613968	regulatory region 613968	410 bp distal
Rr613969	regulatory region 613969	within coordinates
Tssr51507	transcription start site region 51507	761 bp upstream
Tssr51508	transcription start site region 51508	730 bp upstream
Tssr51509	transcription start site region 51509	571 bp upstream
Tssr51510	transcription start site region 51510	543 bp upstream
Tssr51511	transcription start site region 51511	491 bp upstream
Tssr51512	transcription start site region 51512	480 bp upstream
Tssr51513	transcription start site region 51513	391 bp upstream