rs259111143 SNP Detail

Summary

• ID
  rs259111143
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79419698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tagtccgcc atcaatggga ggagaggccc
  ttggtcttgg gaagattata tgccccagta cagggaaatg ccagggccag gaagtgagag
  tgggtagatt gggaagcagg gtgggagggg gggtataggg gacttttggg atagcatttg
  R
  aatgtaaatg aagaaaatat ctaataaaaa aCAAAAAAGT AAACATGCTA AAATGAAAAA
  AAAAAGAAAG AAAGTTTTGT GGCTTATTAG TTGTTGACTC TATCTATATA GTAATGAGTA
  AGAGGAGGAG AGACCTCCAG CTAATAGACC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319807663	CHEV_1_79438556	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259111143					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79419698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi462	CpG island 462	1843 bp distal
Rr17631	regulatory region 17631	1498 bp distal
Rr29697	regulatory region 29697	1497 bp distal
Scg2	secretogranin II	1861 bp upstream
Tssr12435	transcription start site region 12435	1967 bp upstream
Tssr12436	transcription start site region 12436	1946 bp upstream
Tssr12437	transcription start site region 12437	1901 bp upstream
Tssr12438	transcription start site region 12438	1873 bp upstream