rs259113264 SNP Detail

Summary

• ID
  rs259113264
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81912012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCATGCA CGAGGCGTGC
  ACATGCTGCA CATACATACA TGCAGATAAA TAAATCTTTA AACAACAGGA GCTGGACATG
  ATGGCACATG ACTTTAATCT CAGAACTCAG GAGACAAAAG CAGGCAGATC TCTGGGGACA
  GTCTGGGTTA CAAGAGTTCG TTCCAGGACA GACAGGACTG TGTAGAGACC ATGTCTGGGC
  R
  AAAGAAAACC AGACAGACAC ACTGAGCAAG CTAGCCAGTG AAGTAAGTCA CTGTAAACTG
  CGTCTTTCTG GATAAACGGT CAGGACAGGA AGCAGCTGGC CTTGCAGCTA TGGCATATGT
  CAAGGAACAG GCCAGGTGTT GGTGGCTTGC TTAGCACACA CTACTGTAAC CGTTTAAGTA
  GAGCGACAAC AAGAGCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394731882	MGP_WTSI_15_81858241	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259113264					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394731882	MGP_WTSI_15_81858241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81912012 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	within coordinates
Tssr132336	transcription start site region 132336	214 bp upstream
Tssr132337	transcription start site region 132337	243 bp upstream
Tssr132338	transcription start site region 132338	278 bp upstream
Tssr132339	transcription start site region 132339	300 bp upstream
Tssr132340	transcription start site region 132340	697 bp upstream
Tssr132341	transcription start site region 132341	1392 bp upstream
Tssr135523	transcription start site region 135523	38 bp downstream
Tssr135524	transcription start site region 135524	1775 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates