rs259115214 SNP Detail

Summary

• ID
  rs259115214
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62444152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG ACTAAAATAT GCATCATTTA
  M
  AGCTTATACT TGTATGACAT CGCAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323703950	CHEV_11_62366828	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259115214					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62444152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3024	CpG island 3024	1381 bp distal
Tssr102028	transcription start site region 102028	1869 bp downstream
Tssr102029	transcription start site region 102029	1849 bp downstream
Tssr102030	transcription start site region 102030	1823 bp downstream
Tssr102031	transcription start site region 102031	1591 bp downstream
Tssr102032	transcription start site region 102032	1587 bp downstream
Tssr102033	transcription start site region 102033	1556 bp downstream
Tssr102034	transcription start site region 102034	1505 bp downstream
Tssr102035	transcription start site region 102035	1467 bp downstream
Tssr102036	transcription start site region 102036	1348 bp upstream
Ubb	ubiquitin B	115 bp downstream