rs259116629 SNP Detail

Summary

• ID
  rs259116629
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172706617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCCTCCT CCTCCTCCCC
  CCTCCCCCTC CCCCCTCCTC CTCCGTAGGC TAATTACTAG TTTATGTGTT GGGTATTTTT
  CATGCATGTT TGTGTACCAA GTGCATGTAG TACCTGAGAA GGCCAGAGGA GGGCATTAGA
  TCCCACAGAA CTTGAGTGAT AAACACTGTG AGCAGTCGTG TGGGTGCTGG GAACTGAACC
  K
  TCAAGGGCAG CCAGTGCGCT TAACTGCAGA CCCATGTCTC CAGCCCTCCA CCCTCCTTTT
  TAGGAGACTT TGAGCACAGG AAGTTTAAGC GACTGCGCCC AGCTCAGGAT AAGCCCGCCT
  TACACTCTGC CCCACCCCCT GCTTCTCACG TGACCCATGC CCACTCTTCC CCCTCCCACT
  TCTGAGAGTC ATAGCTTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356652027	MGP_WTSI_2_172690325	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259116629					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356652027	MGP_WTSI_2_172690325	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172706617 () rs orientation: forward

Symbol	Name	Function Class
1700055K11Rik	RIKEN cDNA 1700055K11 gene	1051 bp downstream
Cpgi12832	CpG island 12832	1111 bp distal
Gm36254	predicted gene, 36254	1708 bp upstream
Gm56447	predicted gene, 56447	483 bp upstream
Gm74706	predicted gene, 74706	within coordinates
Rr1066	regulatory region 1066	657 bp downstream
Rr374298	regulatory region 374298	292 bp upstream
Rr407149	regulatory region 407149	692 bp distal
Rr571761	regulatory region 571761	760 bp distal
Rr571762	regulatory region 571762	61 bp distal
Rr571763	regulatory region 571763	712 bp proximal
Rr571764	regulatory region 571764	1971 bp proximal