rs259126137 SNP Detail

Summary

• ID
  rs259126137
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156313551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCCAGCT GTCTGAGTCA
  CTGGTGACTG TCGGGGGTGT GTTGCTCACT CTCAGCTGCT CAAGAGGTGC AATTTCATAT
  AAAGGGAGAG AGACCTGAAC CCTCCCCCAG CTTCTCTTCA TTCTGGGCCA ACCCTTATCC
  AGAATGAAGT CAGGGTCCCC AAAGTTTAAT CAAATGCAAG AAAGAGGCCA CGTGCCTCTC
  R
  GGTTCCTAAG GCTATCTTCC TCATTGGCCC CACACTCCCA GATCCCAGGA GCCTCAAGAC
  TAGGATGACA GCCAGTCTCT GTTCCACTTG AATGCAGAAG TGCCATTTTG CAGCCCCAGA
  CGTTAAGGTA GCGTTTGAGT CTGGCTGCAC ACTTGCCTGT AGACCTTCAC TCTGTTGTCC
  AGAGAGGAGC CAAAGATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss363816510	MGP_WTSI_4_155603203	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs259126137					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363816510	MGP_WTSI_4_155603203	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156313551 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	241 bp downstream
Mir7658	microRNA 7658	965 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	552 bp upstream
Rr606703	regulatory region 606703	98 bp distal
Rr606704	regulatory region 606704	521 bp distal
Tssr45022	transcription start site region 45022	556 bp upstream
Tssr45023	transcription start site region 45023	524 bp upstream
Tssr45024	transcription start site region 45024	285 bp upstream