rs259136517 SNP Detail

Summary

• ID
  rs259136517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84573828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tggtgagaa tatctccaaa aaTTATCAAG
  GAATGAGGGC GACAGTCAGT CTCAGAGGTA GGAAGCAAGG GCTAGAAATG AGGACTTACA
  TGACATAAAC ACACATGTAT AAGCTTGCGC ACATACACAG AGCACATATA CACACACATA
  R
  GAAtgtattt cattttctcc agggtcaaat ttcttcatag attatttcgg gcttgtatgc
  accggaaata tgtcttctca aacttactta cacacttgtt ttaggatctt atttaatcac
  ttattttaat atcagcctgg gcttattaat                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261877	CHEV_16_84777185	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259136517					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84573828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	1708 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Rr392068	regulatory region 392068	1241 bp upstream
Rr518534	regulatory region 518534	1578 bp distal