rs259138950 SNP Detail

Summary

• ID
  rs259138950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156021615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCCAGGA AGGATGCAGC
  GGAGCGCTTC CTCACCGCAC AAAACCCGCG CTGCCATTTT AGCGGCGGAG GGAGACTCCC
  TCCGCTGGGA GGGGTTGTGT ACCACGGCGG CGTTCCACGG GCGCCATGTT GGGAGGTCGC
  GACCAGCCCC GGCCCTCGGA AGGACAGATC TTTATCTGAC CGAGGTCCCC ACGGAGGTCC
  S
  GGCCGCTACC AAAAAACGCC CACGACGTCC TTGCCCGAGA TGAAGGGCAC GGCCGAGGAG
  AGGTGACCCC ACCGTACCGG GAAGGCCCCC TCCCCCTCTG CGCGCCGAGC AAAGCGGCGA
  AAAGCCTCGG CATCGCGGAG CACCCAGCTC GGGCAGGCGA CCCACTCCCC GCCGGCCGCG
  ACGCCCCGTA CCTGTGCGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356230731	MGP_WTSI_2_156005431	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259138950					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356230731	MGP_WTSI_2_156005431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156021615 () rs orientation: forward

Symbol	Name	Function Class
A930012N16Rik	RIKEN cDNA A930012N16 gene	882 bp upstream
Cpgi12544	CpG island 12544	within coordinates
Gm75045	predicted gene, 75045	within coordinates
Rbm39	RNA binding motif protein 39	within coordinates
Rr367341	regulatory region 367341	127 bp downstream
Rr367342	regulatory region 367342	443 bp upstream
Tssr21144	transcription start site region 21144	86 bp downstream
Tssr27042	transcription start site region 27042	1915 bp upstream
Tssr27043	transcription start site region 27043	277 bp downstream
Tssr27044	transcription start site region 27044	440 bp downstream