rs259138970 SNP Detail

Summary

• ID
  rs259138970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:88823453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGACCCTCC GCGGGCTCTG
  GCCGCTCAGC TTCACCTCCA GCGGGCATAA GGCTAGGGGG GAGTCGGGGT GGGGGGCGTC
  GGCGGCGCCC CCAAAACCTA CCATGGGCCC GGCGGGAAAC AAGGCCTCTA CATTCACCCC
  AGCCACACTT ACACTGCCCA ACCGCCCAGA CTCGGAGGGA ACAAAACAAG AAGAGCCGGG
  R
  CCGTGAGAGC GTCCCTTGTT CCCGTGCCCA ATAGGAGGAC GGAGCGGGAG GGAGGCGGGG
  GTGCGGTGCG TGCCGCGGAT CCCCGGGCGC GCACGCGGGG CGCTCGCGGA CAGACCGACG
  CGGGCGCGCG GCCGCCGAGG GTCCCGCGCG CGGCGCCACG TACCTGACTG TAACCCCGCG
  CCGGGCCCGC GGCGGCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365796643	MGP_WTSI_5_89104619	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259138970					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365796643	MGP_WTSI_5_89104619	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88823453 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16030	CpG island 16030			within coordinates
Gm71600	predicted gene, 71600			629 bp upstream
Grsf1	G-rich RNA sequence binding factor 1			Intron
				mRNA-UTR
Rr614150	regulatory region 614150			within coordinates
Rr614151	regulatory region 614151			62 bp proximal
Rr614152	regulatory region 614152			363 bp proximal
Rr614153	regulatory region 614153			424 bp proximal
Rr614154	regulatory region 614154			567 bp proximal
Rr614155	regulatory region 614155			640 bp proximal
Tssr51689	transcription start site region 51689			367 bp upstream
Tssr51690	transcription start site region 51690			31 bp upstream
Tssr51691	transcription start site region 51691			2 bp upstream
Tssr51692	transcription start site region 51692			19 bp downstream
Tssr51693	transcription start site region 51693			517 bp downstream
Tssr51694	transcription start site region 51694			541 bp downstream
Tssr51695	transcription start site region 51695			598 bp downstream
Tssr51696	transcription start site region 51696			632 bp downstream