rs259143845 SNP Detail

Summary

• ID
  rs259143845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166904208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGATGGGA GATTCCAAAT
  ACTCCGGAGA TGATAGGGGA ACTGAGGGAC TCTGGGGGCT ATAGGGAAAC TAAGAGAAAG
  GGGCAGGGAC TCTGGGGGCT ATAGGGAAAC TGAAGAAGCA GACAGGGACT TCGGGGACTA
  TAGGGGGGGC TGAGAGAAAG AGAACAGGGA CTCCGGAGGC TACAGGATAA TTGAGGGAAG
  R
  GGACAGGGAC TCCGGAGGCT ACAGGATAAT TGAGGGAAGG GGACAGGGAC TCCGGGGGTA
  TAGGGAAACT GAGGGAAAGG GACAGGGACT CTGGAGGCTA TAGGAAAACT AAGGGAAGGG
  GACATGGACT CTGGGGACTA TAGGAGAACT GAGGGAAGGG GACAGGGACT CCGGGGGTGG
  TGGGGGCGCT GAGTGGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356497145	MGP_WTSI_2_166887788	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259143845					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356497145	MGP_WTSI_2_166887788	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166904208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12730	CpG island 12730	within coordinates
Gm25878	predicted gene, 25878	1185 bp upstream
Gm56406	predicted gene, 56406	728 bp upstream
Gm75600	predicted gene, 75600	1175 bp downstream
Rr397500	regulatory region 397500	842 bp upstream
Rr570436	regulatory region 570436	1934 bp distal
Rr570437	regulatory region 570437	1726 bp distal
Rr570438	regulatory region 570438	1514 bp distal
Rr570439	regulatory region 570439	398 bp distal
Rr570440	regulatory region 570440	within coordinates
Rr570441	regulatory region 570441	717 bp proximal
Tssr21786	transcription start site region 21786	1741 bp downstream
Tssr21787	transcription start site region 21787	999 bp downstream
Tssr21788	transcription start site region 21788	986 bp downstream
Tssr21789	transcription start site region 21789	527 bp upstream
Tssr21790	transcription start site region 21790	925 bp upstream
Tssr27734	transcription start site region 27734	1858 bp upstream
Tssr27735	transcription start site region 27735	1832 bp upstream
Tssr27736	transcription start site region 27736	1452 bp upstream
Tssr27737	transcription start site region 27737	1441 bp upstream
Tssr27738	transcription start site region 27738	1396 bp upstream
Tssr27739	transcription start site region 27739	1212 bp upstream
Tssr27740	transcription start site region 27740	270 bp downstream
Tssr27741	transcription start site region 27741	319 bp downstream
Tssr27742	transcription start site region 27742	444 bp downstream
Tssr27743	transcription start site region 27743	576 bp downstream
Tssr27744	transcription start site region 27744	693 bp downstream
Zfas1	zinc finger, NFX1-type containing 1, antisense RNA 1	646 bp upstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates