rs259144388 SNP Detail

Summary

• ID
  rs259144388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72307200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCACGAC CCGCTGGCGG
  CGAGTGCGTT GTTACCTACG CGTGCACTAG TGGCCCTGGG ATCGATCCTC TTTTGCTCTG
  CGTCCCCTTC TAACCACTCT GGATCTGCGG GTTTAGCGTA GATGGCCTTG TGAGCATTTC
  TTGAGAACTT GGGTTGTGCA CGTGGGGGGA GGTATTGTTT TAGTCCTAGG CTGTGGTCAG
  R
  TGCAATTTTG GGGCCCAGCG ATGCAAGTCG TGTGCCGCGA CCGTTTAGTA ACCTTCCCTG
  CGTCCCCCAA CTCCCCACCC GTCCCACCCT TTTCTTCCCG GCTTGCAGCT GCGAGCTGGA
  ACGTAACTCT TTTTGCTCCA ACGGAAGCCA GAACTTATGT CCTGCCCTGG AGTGGGTTGA
  AGAGTGGGGG GATGGGCGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342593	CHEV_2_72314913	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259144388					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72307200 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	within coordinates
Cpgi11756	CpG island 11756	within coordinates
Rr397036	regulatory region 397036	790 bp downstream
Rr558978	regulatory region 558978	1571 bp distal
Rr558979	regulatory region 558979	687 bp distal
Rr558980	regulatory region 558980	within coordinates
Rr558981	regulatory region 558981	1270 bp proximal
Tssr18351	transcription start site region 18351	856 bp downstream
Tssr18352	transcription start site region 18352	644 bp downstream
Tssr18353	transcription start site region 18353	632 bp downstream
Tssr18354	transcription start site region 18354	597 bp downstream