rs259150685 SNP Detail

Summary

• ID
  rs259150685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87055388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGTCCCT CCAGGTGGCT CATCGTACCG
  GCAGCAGGCT GCTGTGCCGG TGAAGTCGGA GACCCACGGC GGGGAGGACG TGGCGATATT
  CGCGCGTGGC CCGCAGGCGC ACTTGCTGCA CGGGGTGCAG GAGCAGAACT ACATCGCGCA
  Y
  GTCATGGCCT TCGCAGGCTG CCTGGAGCCC TACACCGACT GCGGCTTGGC ACCCCCTGCA
  GATGAAAGCC AGACCACCAC GACAACCCGC CAGaccacca tcaccaccac caccaccacc
  accaccacca caaccaccCC GGTCCATAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319829037	CHEV_1_89024241	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259150685					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87055388 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	within coordinates
Cpgi518	CpG island 518	within coordinates
Rr17963	regulatory region 17963	588 bp distal
Tssr145	transcription start site region 145	1314 bp downstream
Tssr146	transcription start site region 146	72 bp downstream
Tssr147	transcription start site region 147	274 bp downstream
Tssr148	transcription start site region 148	936 bp upstream
Tssr7783	transcription start site region 7783	1970 bp downstream
Tssr7784	transcription start site region 7784	1728 bp downstream
Tssr7785	transcription start site region 7785	1689 bp downstream
Tssr7786	transcription start site region 7786	1662 bp downstream
Tssr7787	transcription start site region 7787	1333 bp downstream
Tssr7788	transcription start site region 7788	935 bp downstream
Tssr7789	transcription start site region 7789	901 bp downstream
Tssr7790	transcription start site region 7790	848 bp downstream
Tssr7791	transcription start site region 7791	721 bp downstream
Tssr7792	transcription start site region 7792	695 bp downstream
Tssr7793	transcription start site region 7793	684 bp downstream
Tssr7794	transcription start site region 7794	671 bp downstream
Tssr7795	transcription start site region 7795	639 bp downstream
Tssr7796	transcription start site region 7796	616 bp downstream
Tssr7797	transcription start site region 7797	603 bp downstream
Tssr7798	transcription start site region 7798	565 bp downstream
Tssr7799	transcription start site region 7799	328 bp downstream
Tssr7800	transcription start site region 7800	292 bp downstream
Tssr7801	transcription start site region 7801	247 bp downstream
Tssr7802	transcription start site region 7802	125 bp downstream
Tssr7803	transcription start site region 7803	65 bp downstream
Tssr7804	transcription start site region 7804	40 bp downstream
Tssr7805	transcription start site region 7805	28 bp upstream
Tssr7806	transcription start site region 7806	42 bp upstream
Tssr7807	transcription start site region 7807	62 bp upstream
Tssr7808	transcription start site region 7808	167 bp upstream
Tssr7809	transcription start site region 7809	237 bp upstream
Tssr7810	transcription start site region 7810	262 bp upstream
Tssr7811	transcription start site region 7811	291 bp upstream
Tssr7812	transcription start site region 7812	341 bp upstream
Tssr7813	transcription start site region 7813	382 bp upstream
Tssr7814	transcription start site region 7814	412 bp upstream
Tssr7815	transcription start site region 7815	480 bp upstream
Tssr7816	transcription start site region 7816	520 bp upstream
Tssr7817	transcription start site region 7817	532 bp upstream
Tssr7818	transcription start site region 7818	707 bp upstream
Tssr7819	transcription start site region 7819	1023 bp upstream
Tssr12838	transcription start site region 12838	1936 bp upstream
Tssr12839	transcription start site region 12839	1926 bp upstream
Tssr12840	transcription start site region 12840	1917 bp upstream
Tssr12841	transcription start site region 12841	858 bp upstream
Tssr12842	transcription start site region 12842	538 bp upstream
Tssr12843	transcription start site region 12843	275 bp upstream
Tssr12844	transcription start site region 12844	70 bp upstream
Tssr12845	transcription start site region 12845	82 bp downstream
Tssr12846	transcription start site region 12846	143 bp downstream
Tssr12847	transcription start site region 12847	614 bp downstream
Tssr12848	transcription start site region 12848	683 bp downstream
Tssr12849	transcription start site region 12849	702 bp downstream