rs259151652 SNP Detail

Summary

• ID
  rs259151652
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:88823746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCGGGGCG CTCGCGGACA
  GACCGACGCG GGCGCGCGGC CGCCGAGGGT CCCGCGCGCG GCGCCACGTA CCTGACTGTA
  ACCCCGCGCC GGGCCCGCGG CGGCTGCCAG CGATCGCGGA AACAGCGGGG CGCGCAGGGC
  CGAGTAGGAC GCGGCGGCGG CCGCGGCGGC GGAGGGACGG GCAGGGATGG GACCCGCCAG
  C
  CTCCCGGCGG CCGCAGGCCC GAGCTGCAGG CCCCGCGTCT GCGAAGCGGC GGCCGCGGCG
  GCCCCGAGGA GTAGCAGCAG GCGGCGGCGG CCAGAGACGC CCGACGGGAA GGTGCCGGCG
  GCGGAGTAGA AAGGCAGGCA GGCGGCGCCG GTCCGCCGGC AGCTGCTGCA GTTGCAGCCG
  CAGCCCCGGA GCAACGCGCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365796646	MGP_WTSI_5_89104912	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259151652					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365796646	MGP_WTSI_5_89104912	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88823746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16030	CpG island 16030	within coordinates
Gm71600	predicted gene, 71600	336 bp upstream
Grsf1	G-rich RNA sequence binding factor 1	Coding-Synonymous
Rr614150	regulatory region 614150	232 bp distal
Rr614151	regulatory region 614151	within coordinates
Rr614152	regulatory region 614152	70 bp proximal
Rr614153	regulatory region 614153	131 bp proximal
Rr614154	regulatory region 614154	274 bp proximal
Rr614155	regulatory region 614155	347 bp proximal
Tssr51689	transcription start site region 51689	660 bp upstream
Tssr51690	transcription start site region 51690	324 bp upstream
Tssr51691	transcription start site region 51691	295 bp upstream
Tssr51692	transcription start site region 51692	232 bp upstream
Tssr51693	transcription start site region 51693	224 bp downstream
Tssr51694	transcription start site region 51694	248 bp downstream
Tssr51695	transcription start site region 51695	305 bp downstream
Tssr51696	transcription start site region 51696	339 bp downstream