rs259156186 SNP Detail

Summary

• ID
  rs259156186
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87054404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAAGGG CTTTGGACCT
  TACCAGTTGC TTATGTCCCT CTAGGGATCC CAGTATGTTT GGAATCGTGA ACAACTCATT
  CAGAAGGCCC AGGATCCGTC AGTGACATAC CTCATGGGTA ATGGCCCCAC ACTTCCTGCA
  CTGGTACACC TCACATGGCA ACCACTGATC CTCTGTGTAT ATATGTACCG TGACCCCACT
  R
  CCAAGCTTGG TGGTCACCAG TATATATTTT GGTTTTGTAC CTCAGGCCTC TTTGAGCCTG
  TAGACACAAA ATTTGATATT CAACGAGATC CCCTGATGGA CCCATCTCTG AAGGATATGA
  CAGAGGCGGC CGTGAAAGTG CTAAGCAGGA ACCCCAAAGG CTTTTATCTC TTTGTGGAGG
  GTGAGTCTCC AAGCTCCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350380314	MGP_WTSI_1_89023257	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259156186					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350380314	MGP_WTSI_1_89023257	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87054404 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	within coordinates
Cpgi518	CpG island 518	428 bp proximal
Rr17963	regulatory region 17963	197 bp proximal
Tssr145	transcription start site region 145	330 bp downstream
Tssr146	transcription start site region 146	906 bp upstream
Tssr147	transcription start site region 147	1258 bp downstream
Tssr148	transcription start site region 148	1920 bp upstream
Tssr7781	transcription start site region 7781	1722 bp downstream
Tssr7782	transcription start site region 7782	1279 bp downstream
Tssr7783	transcription start site region 7783	986 bp downstream
Tssr7784	transcription start site region 7784	744 bp downstream
Tssr7785	transcription start site region 7785	705 bp downstream
Tssr7786	transcription start site region 7786	678 bp downstream
Tssr7787	transcription start site region 7787	349 bp downstream
Tssr7788	transcription start site region 7788	43 bp upstream
Tssr7789	transcription start site region 7789	73 bp upstream
Tssr7790	transcription start site region 7790	127 bp upstream
Tssr7791	transcription start site region 7791	251 bp upstream
Tssr7792	transcription start site region 7792	279 bp upstream
Tssr7793	transcription start site region 7793	292 bp upstream
Tssr7794	transcription start site region 7794	309 bp upstream
Tssr7795	transcription start site region 7795	335 bp upstream
Tssr7796	transcription start site region 7796	358 bp upstream
Tssr7797	transcription start site region 7797	375 bp upstream
Tssr7798	transcription start site region 7798	412 bp upstream
Tssr7799	transcription start site region 7799	648 bp upstream
Tssr7800	transcription start site region 7800	667 bp upstream
Tssr7801	transcription start site region 7801	726 bp upstream
Tssr7802	transcription start site region 7802	853 bp upstream
Tssr7803	transcription start site region 7803	914 bp upstream
Tssr7804	transcription start site region 7804	938 bp upstream
Tssr7805	transcription start site region 7805	1012 bp upstream
Tssr7806	transcription start site region 7806	1026 bp upstream
Tssr7807	transcription start site region 7807	1046 bp upstream
Tssr7808	transcription start site region 7808	1151 bp upstream
Tssr7809	transcription start site region 7809	1221 bp upstream
Tssr7810	transcription start site region 7810	1246 bp upstream
Tssr7811	transcription start site region 7811	1275 bp upstream
Tssr7812	transcription start site region 7812	1325 bp upstream
Tssr7813	transcription start site region 7813	1366 bp upstream
Tssr7814	transcription start site region 7814	1396 bp upstream
Tssr7815	transcription start site region 7815	1464 bp upstream
Tssr7816	transcription start site region 7816	1504 bp upstream
Tssr7817	transcription start site region 7817	1516 bp upstream
Tssr7818	transcription start site region 7818	1691 bp upstream
Tssr12838	transcription start site region 12838	952 bp upstream
Tssr12839	transcription start site region 12839	942 bp upstream
Tssr12840	transcription start site region 12840	933 bp upstream
Tssr12841	transcription start site region 12841	116 bp downstream
Tssr12842	transcription start site region 12842	442 bp downstream
Tssr12843	transcription start site region 12843	704 bp downstream
Tssr12844	transcription start site region 12844	895 bp downstream
Tssr12845	transcription start site region 12845	1066 bp downstream
Tssr12846	transcription start site region 12846	1127 bp downstream
Tssr12847	transcription start site region 12847	1598 bp downstream
Tssr12848	transcription start site region 12848	1667 bp downstream
Tssr12849	transcription start site region 12849	1686 bp downstream