rs259159043 SNP Detail

Summary

• ID
  rs259159043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84468896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCCTGGA AGTTGTCCTC
  TGACCTTCAC GGGCACACGG TGCCACACAC AAACCCAAAC ACTAAATAAA CAAGTCAATA
  AATAAAACGT AATAAGGGGC CGGGCAGTGG TGGCGCATGC CTGTAATCCC AGCACTTGAG
  AGGCAGAGGC AGGCGGATTA CTGAGTTCGA GGCCAGCCTG GTCTAGAGAG TGAGTTCCAG
  R
  ACAGCCAGGA CTGCACAGAG AAACCCTGTC TCAAAAAGCC AAAACAAATA AACAAACAAA
  AAACGTAATA AGGACTTAAA ATAGAGGAAG AGAGAGCTTT GACCACGGGA CATGGCTTAC
  CACGGCAGGG CTTTTTGGTT ACACGCACTG ACCTTGCCAC AGTCTATAGA GAGTCATGTG
  ATGTACACTG GCTTCCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375384499	MGP_WTSI_8_86266166	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259159043					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375384499	MGP_WTSI_8_86266166	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84468896 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	1084 bp upstream
Cpgi20655	CpG island 20655	577 bp distal
Gm46046	predicted gene, 46046	within coordinates
Rr666301	regulatory region 666301	1007 bp distal
Rr666302	regulatory region 666302	898 bp distal
Rr666303	regulatory region 666303	88 bp distal
Rr666304	regulatory region 666304	within coordinates
Tssr2619	transcription start site region 2619	1866 bp downstream
Tssr2620	transcription start site region 2620	970 bp downstream
Tssr2621	transcription start site region 2621	288 bp upstream
Tssr78291	transcription start site region 78291	1911 bp downstream
Tssr78292	transcription start site region 78292	1889 bp downstream
Tssr78293	transcription start site region 78293	1748 bp downstream
Tssr78294	transcription start site region 78294	1693 bp downstream
Tssr78295	transcription start site region 78295	1647 bp downstream
Tssr78296	transcription start site region 78296	1628 bp downstream
Tssr78297	transcription start site region 78297	833 bp downstream
Tssr82051	transcription start site region 82051	1835 bp upstream
Tssr82052	transcription start site region 82052	1077 bp upstream