rs259161102 SNP Detail

Summary

• ID
  rs259161102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11487885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTGCAT TTTGCCCACG
  GTCTTTACAC ACCTTGGTAC GTTCACAGAA ACTGCAGTTC CTAGAGCGCC CCTGGTGGCC
  AACCAGCTCT AAACTGGTTG CCAGGCGGCT GCGGGCTCCA AATTGGGAGA GCAGCTTGGA
  ATGCGTTTGA AGCTGCTAAG GCCGAGCAAG CAGAGAGAAG CTGGCCAGAG AAGTTGGGGG
  R
  TGGGGGTGGG GGTGGGGGCG TGGGGGGCGG GGTTTCAGGC CATGGCACTA AGCAGGTTCA
  AAGCTAACCT TGCCCAACTC AGGAATGAAT ACTCTTTCCA GGCCAGATTC TTAAGAAAGG
  TGCCAAAGAC AGATAGCGCA CCTTCGGGAA TCCTAGGACA GAGGTAGTGG CCATCCCCTC
  CCTGCAGAGC TCTTAGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J
ss385137478	MGP_WTSI_12_11444690	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J
rs259161102					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385137478	MGP_WTSI_12_11444690	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11487885 () rs orientation: forward

Symbol	Name	Function Class
4930511A02Rik	RIKEN cDNA 4930511A02 gene	349 bp upstream
Cpgi4418	CpG island 4418	1112 bp distal
Cpgi4419	CpG island 4419	136 bp proximal
Rr462903	regulatory region 462903	1754 bp distal
Rr462904	regulatory region 462904	781 bp distal
Rr462905	regulatory region 462905	within coordinates
Rr462906	regulatory region 462906	330 bp proximal
Rr462907	regulatory region 462907	858 bp proximal
Tssr3791	transcription start site region 3791	1397 bp upstream
Tssr3792	transcription start site region 3792	1344 bp upstream
Tssr3793	transcription start site region 3793	1164 bp upstream
Tssr112802	transcription start site region 112802	307 bp upstream
Tssr115746	transcription start site region 115746	1375 bp upstream
Tssr115747	transcription start site region 115747	1281 bp upstream
Tssr115748	transcription start site region 115748	1266 bp upstream
Vsnl1	visinin-like 1	1306 bp upstream