rs259166345 SNP Detail

Summary

• ID
  rs259166345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81334372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCACGG GGAATTTTGT
  GGAAGGAACC CGGGGCTTGC TGTCATGTTC TCAGTCACCA TCAGGCAAGG TTCTTGTGTC
  CTGTCCCTTC TCACCTCGTC TGGGAGGGCC TGCTCAGTGG GCAACTGGCT GGTCCAAGCT
  CTAGGTGCTG CGGACGCTGG AAATGCTGGA CAGCGGCTCT CTCATCCTGA AGCTGAGTGA
  Y
  CGAGAAGTCC GAAAACTGTC CCTGGGCCTC AGGGAGCTGT CAGTGGTGGA TGCACCGGAG
  TGGGCCTCGG TGATCCGGGT CAGGCAGTCT CCTGGACCTC GCAGACCTAG CCAGAGACAG
  CCGCAGCACA GGAAGGCCAG CACAGCGCGC TGCACCTCAC GGCTGCGGAA GGAGTAGATG
  AGAGGATTAA TGGCTGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381037055	MGP_WTSI_10_80961283	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259166345					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381037055	MGP_WTSI_10_80961283	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81334372 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	1881 bp distal
Cpgi1994	CpG island 1994	within coordinates
Rr402085	regulatory region 402085	1953 bp downstream
Rr435686	regulatory region 435686	1656 bp distal
Rr435688	regulatory region 435688	863 bp proximal
S1pr4	sphingosine-1-phosphate receptor 4	within coordinates
Tssr98631	transcription start site region 98631	1058 bp downstream
Tssr98632	transcription start site region 98632	1084 bp downstream
Tssr98633	transcription start site region 98633	1112 bp downstream
Tssr98634	transcription start site region 98634	1148 bp downstream