rs259168242 SNP Detail

Summary

• ID
  rs259168242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140906102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGAAGCT TCCCTCACTC
  CTGTGACTGG ATCTAGGCTT CAGGTAGGTA GGTACAGCAG AAAACACGCG GAAGCAAGGG
  TTCTCCACCA CTGCGTTCCA GTGCCAACGG TCTGAACACC CACCCAGAGT TAAGCTTCAG
  CTCTGATGTG CCCTGAATAA AAGCCCAATG CCAAGCCTGC AGCTTCACAC TGGAAAGAAC
  R
  AAACAAGACG CATGGCAAAA TGATGGTCTT CCAAGGATTC GCATGTACAA GCATAAAACA
  TATAAGAGCT CCAATTGGTA GGGAGTTCAA CACTCAGGAA GGTCAAAGGG TGGGGTGTGT
  GGTGGGATTG TAGGAGGCAG TTTGGTGTGG TATCACCTGT ACAGGGTGAT ACAGCTCAGC
  TCAAGGCTCC ATTTGTCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373429730	MGP_WTSI_7_148512088	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259168242					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373429730	MGP_WTSI_7_148512088	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140906102 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19932	CpG island 19932	437 bp proximal
Deaf1	DEAF1, transcription factor	within coordinates
Rr166953	regulatory region 166953	within coordinates
Rr400715	regulatory region 400715	1664 bp upstream
Tmem80	transmembrane protein 80	1944 bp upstream
Tssr69944	transcription start site region 69944	1651 bp upstream
Tssr69945	transcription start site region 69945	1933 bp upstream
Tssr69946	transcription start site region 69946	1953 bp upstream
Tssr75631	transcription start site region 75631	1321 bp downstream
Tssr75632	transcription start site region 75632	1368 bp downstream
Tssr75633	transcription start site region 75633	1460 bp downstream
Tssr75634	transcription start site region 75634	1486 bp downstream
Tssr75635	transcription start site region 75635	1511 bp downstream
Tssr75636	transcription start site region 75636	1549 bp downstream
Tssr75637	transcription start site region 75637	1992 bp downstream