rs259170941 SNP Detail

Summary

• ID
  rs259170941
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88375245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGAGCAC TGGCTGTCCT
  TCCAGAGGTC TCACTTCAGT CCCAGCAACC ACATGGTAGC TCCAACTATC TGTAACTCCA
  ATTCTAGGGC ATCTGTCCCC CTCTTCTGGC CTCTGCAAGC ACCAGGCATG CACTTGGTGT
  ACAGACTTGC ATGCAGGCAG AACTCACACA TAAACCTTAA GAAATTATTT TATTAAAAAA
  W
  ATCCAACAAT TCGAGTCATG CATGAGTAGC TAAAGCCTAT ATTCACAGAA TTCTGAAGGC
  TGAAGCAGAA GGGATAGCAA GTTCTAGGCT ATCCCGATCT GCGAAACAAG ATCCTATCTG
  ACTAAATACA TAAACAGTAT TAAAAATGTC ATGGTTGTTA ACTGGGTAAA AATGAGCATT
  TATGGTTGGA TTTAATAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325500674	CHEV_17_88467157	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259170941					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88375245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	1172 bp distal
Rr333911	regulatory region 333911	within coordinates
Rr333912	regulatory region 333912	556 bp proximal
Rr333913	regulatory region 333913	1356 bp proximal
Rr340317	regulatory region 340317	444 bp distal
Rr344409	regulatory region 344409	446 bp proximal
Rr370332	regulatory region 370332	1230 bp downstream
Rr405528	regulatory region 405528	1417 bp downstream
Tssr149796	transcription start site region 149796	1986 bp upstream
Tssr149797	transcription start site region 149797	1944 bp upstream
Tssr149798	transcription start site region 149798	1824 bp upstream
Tssr149799	transcription start site region 149799	1730 bp upstream