rs259171018 SNP Detail

Summary

• ID
  rs259171018
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155927226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGAGGCCA CAGCATCATC
  AATGTCATTG TCCCAGAGGA CCACACACAT TTCTTCCAGC AACTGGGCTA TGTGTTGGCC
  ACGCTGCTGC TCTTCATCTT GCTGCTCATC ACTGTAGTCC TGGCTACACG ATATCGTCAC
  AGCGGAGGTG AGGCTGGGCC CTTGGAACAG AGGGGCCCAG ATTAACCGAG AACAGTGAGA
  S
  CAACCCAATA ACTCTCTTCA CAGGATGCAA GACGTCGGAC AAAAAAGCTG GGAAGTCAAA
  GGGGTGAGTT TGCCTGCCCA ACTCTCCTCC CAGACCTGTC CTGCCCTGGC CTCCTAAACT
  GCTATCTCCC TTTAGGAAGG ATGTGAACAT GGTGGAGTTT GCTGTAGCCA CAAGGGATCA
  GGCTCCATAT AGGACTGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363804880	MGP_WTSI_4_155216878	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259171018					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363804880	MGP_WTSI_4_155216878	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155927226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	606 bp distal
Gm68629	predicted gene, 68629	839 bp upstream
Mxra8	matrix-remodelling associated 8	within coordinates
Rr398927	regulatory region 398927	1285 bp downstream
Rr606591	regulatory region 606591	1664 bp distal
Rr606592	regulatory region 606592	1158 bp distal
Rr606593	regulatory region 606593	1601 bp distal
Tssr40729	transcription start site region 40729	1661 bp downstream
Tssr40730	transcription start site region 40730	1631 bp downstream
Tssr40731	transcription start site region 40731	1602 bp downstream
Tssr40732	transcription start site region 40732	1594 bp downstream
Tssr40733	transcription start site region 40733	1293 bp downstream
Tssr40734	transcription start site region 40734	282 bp upstream
Tssr44980	transcription start site region 44980	1714 bp upstream
Tssr44981	transcription start site region 44981	1665 bp upstream