rs259171385 SNP Detail

Summary

• ID
  rs259171385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29228928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCTGACT CATTCCCAGC
  CGTCTCCTCC GCGAGCCGAG GCCGCAAGCA CGCTGCGCCA ACCCGCACCC GCCCCGCTCC
  TCCTCCTCCT CGCGCGCTCT CGCCCGGGGG CTGCCCCGGG AATCTCCACG CGCGCCTCCG
  CTTCCCCGGA GCCCGCGGCC GCCTCCCCCG TCCCGGCCCA GCCCCGCAGA GCGGCCCCGC
  R
  GGCGGCGCAG GCGCAGTGGG GCGTGCCGGC CTCCGCCCCC CCGCCAACCC CCGCCGGCTT
  GCCCACGCCC CGCTCCGCCG CTCGGGGCCG CTTTCCCGAA GCTGCACCGC GCCGGAGCCC
  GCCGAGCAGG GCAGCTGAGC CGGCGTCGCG GGGCCGAGCG GAGGCGGCGT GCGGCCCCTG
  GAGGGCGGAG ACGGGCTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss402211696	MGP_WTSI_19_29326018	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs259171385					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402211696	MGP_WTSI_19_29326018	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29228928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	within coordinates
Gm41829	predicted gene, 41829	within coordinates
Gm59364	predicted gene, 59364	27 bp upstream
Jak2	Janus kinase 2	300 bp upstream
Tssr155779	transcription start site region 155779	890 bp downstream
Tssr155780	transcription start site region 155780	53 bp upstream
Tssr155781	transcription start site region 155781	220 bp upstream
Tssr155782	transcription start site region 155782	332 bp upstream
Tssr155783	transcription start site region 155783	364 bp upstream
Tssr155784	transcription start site region 155784	772 bp upstream
Tssr155785	transcription start site region 155785	901 bp upstream
Tssr155786	transcription start site region 155786	926 bp upstream
Tssr155787	transcription start site region 155787	1026 bp upstream
Tssr158749	transcription start site region 158749	566 bp downstream