rs259175749 SNP Detail

Summary

• ID
  rs259175749
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9305718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTAAAGT AGGCATATCA
  GACCTGGGGC CAATGGGCCA CATACATCTA AGAATAGCTA TGCATGCAGC CCGACATATT
  TGTTGAGCAC ATCGTGTTTC AAAGACAAGT CAATGTGTTT GCCACATCTA TTTGAAAAGA
  TATATTTAGA GTAAGATAAT GAGTTTCTCA TGTGTTCTAT GTGAGAGGGG GATTTCCTCA
  R
  GGTTTCATGA TGGCTAAAAC TGTAGTGACA ATAGAAAGAC ACCATGTCAT CTGTCAACTT
  ATGATTTTAG ACTCAGACAC TTGATCTGAA AGTGAAGGTA TAATAGTCTT AATAGTAAGC
  ATAAGCTGTA CTCATTATTG AAAATCAATA TATAAAATAG TGACATTTGG ACAACTAAAG
  AAGAGAAATG CTATGAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403025323	MGP_WTSI_X_9016605	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259175749					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403025323	MGP_WTSI_X_9016605	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9305718 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	1068 bp upstream
Rr689864	regulatory region 689864	1823 bp proximal
Tssr162893	transcription start site region 162893	1936 bp upstream
Tssr162894	transcription start site region 162894	1900 bp upstream
Tssr162895	transcription start site region 162895	1844 bp upstream
Tssr162896	transcription start site region 162896	1817 bp upstream
Tssr162897	transcription start site region 162897	1786 bp upstream
Tssr162898	transcription start site region 162898	1766 bp upstream
Tssr162899	transcription start site region 162899	1626 bp upstream
Tssr162900	transcription start site region 162900	1608 bp upstream
Tssr162901	transcription start site region 162901	1579 bp upstream
Tssr162902	transcription start site region 162902	1496 bp upstream
Tssr162903	transcription start site region 162903	1442 bp upstream
Tssr162904	transcription start site region 162904	1335 bp upstream
Tssr162905	transcription start site region 162905	1261 bp upstream
Tssr162906	transcription start site region 162906	1246 bp upstream
Tssr162907	transcription start site region 162907	1174 bp upstream
Tssr162908	transcription start site region 162908	1143 bp upstream
Tssr162909	transcription start site region 162909	444 bp downstream
Tssr162910	transcription start site region 162910	469 bp downstream
Tssr162911	transcription start site region 162911	523 bp downstream