rs259184960 SNP Detail

Summary

• ID
  rs259184960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149983755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGAATTC GTGCATCAAG
  AAATGATGAC AAATAATACT GTTATTTATA TAAATAACTA AAAAGGGTGT CTAATGAAGA
  AATATATTTT ATTACAAAGA AATTATAAAA CATTTTGAAG ATTATATGCT TTAAAAGTTT
  AAGATGAAAA AATAATCAAC CTTAGAAAAA ATGTATAAAA ATATATAAAT TGTTAATGTC
  R
  TTGATTAAAA AAAAAAAAAA CTAGCCAACA TGATTTTTGT GAATATCAAC CTGCTGATTG
  AACCTGGGAA TTCAGGTTAA GTATGTGACT GCTACAGTGC CTCAGAGAAA TTTGTATTTA
  AATTAACTTA TGTAAAAAAT AAATCTTAGA GCAAATGCTT GTTTATTTTT ATACTTATTT
  AAGAATTGAA AACTTCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351888795	MGP_WTSI_1_151955134	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259184960					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888795	MGP_WTSI_1_151955134	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149983755 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9287	transcription start site region 9287	1519 bp downstream
Tssr9288	transcription start site region 9288	1405 bp downstream
Tssr9289	transcription start site region 9289	1388 bp downstream
Tssr9290	transcription start site region 9290	1234 bp downstream
Tssr9291	transcription start site region 9291	1186 bp downstream
Tssr9292	transcription start site region 9292	1058 bp downstream
Tssr9293	transcription start site region 9293	1042 bp downstream
Tssr9294	transcription start site region 9294	1019 bp downstream
Tssr9295	transcription start site region 9295	992 bp downstream
Tssr9296	transcription start site region 9296	980 bp downstream
Tssr9297	transcription start site region 9297	967 bp downstream
Tssr9298	transcription start site region 9298	941 bp downstream
Tssr9299	transcription start site region 9299	923 bp downstream
Tssr9300	transcription start site region 9300	904 bp downstream
Tssr9301	transcription start site region 9301	771 bp downstream
Tssr9302	transcription start site region 9302	747 bp downstream
Tssr9303	transcription start site region 9303	671 bp downstream
Tssr9304	transcription start site region 9304	651 bp downstream
Tssr9305	transcription start site region 9305	642 bp downstream
Tssr9306	transcription start site region 9306	630 bp downstream
Tssr9307	transcription start site region 9307	604 bp downstream
Tssr9308	transcription start site region 9308	587 bp downstream
Tssr9309	transcription start site region 9309	565 bp downstream
Tssr9310	transcription start site region 9310	540 bp downstream
Tssr9311	transcription start site region 9311	517 bp downstream
Tssr9312	transcription start site region 9312	499 bp downstream
Tssr9313	transcription start site region 9313	491 bp downstream
Tssr9314	transcription start site region 9314	472 bp downstream
Tssr9315	transcription start site region 9315	380 bp downstream
Tssr9316	transcription start site region 9316	195 bp downstream
Tssr9317	transcription start site region 9317	71 bp upstream
Tssr9318	transcription start site region 9318	800 bp upstream