rs259189880 SNP Detail

Summary

• ID
  rs259189880
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45866669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGTCAAG ACTGGTAACC
  AGAGACTCCC TGCCTACGCA AGCAGCAAAC AGGGGGATTC CGGAGGGGCG GGGCTCTACC
  CGGAAGCTCC TTTGAGGGCG GGGCTGTGGG CGTGGCAGTG GCTGCGGGCC ACTTCTTGGG
  TCCGGGGGCG GGGCGACAGA GAAGACCTAA CTAGGGACCG TTCAGCTGCC CAAAGCACCC
  S
  CTGCGGTGGA CCTGGCCGGC GCCCTGGACC TCTCGCTTTT CTCATCCGCT CCCCGCGCCT
  GCACAGGCAG GTAATGAAGC CGCTCGGAGA GTGACTCTGG TTCTGTTAGG CGGTCACACA
  AACCCGGAAA AGCTCGCTTT TGCACACCTC AGAGTTAGAT CCCGCTGGAC CCTGGACCCC
  GGGCTGGCGC GGCCGGCATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403386	CHEV_17_45692692	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259189880					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45866669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	within coordinates
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	within coordinates
Rr405302	regulatory region 405302	within coordinates
Rr527427	regulatory region 527427	769 bp distal
Rr527428	regulatory region 527428	22 bp distal
Rr527429	regulatory region 527429	968 bp proximal
Tssr144787	transcription start site region 144787	70 bp downstream
Tssr144788	transcription start site region 144788	29 bp downstream
Tssr144789	transcription start site region 144789	within coordinates
Tssr144790	transcription start site region 144790	51 bp upstream
Tssr144791	transcription start site region 144791	62 bp upstream
Tssr144792	transcription start site region 144792	135 bp upstream
Tssr144793	transcription start site region 144793	516 bp upstream