rs259192909 SNP Detail

Summary

• ID
  rs259192909
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57529031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCATCTAG GTTTGGAAGC
  ATGTCCCTCC TTGTGTCCTC CCCAGTCTCT TTTCTCACCT GCTCTCTGTT CAGTCTGCAG
  TCCTTGGCTT GTCTTGAAGG CCAGGCCTGC ATCCATGAAG ACACCAGCAT AGTTCTTCCC
  ACTGCCTGGG GTGCAGCCAA TGTCTGCCTT CTCTACCACA TCCCAGATCT GCAAGTGAGG
  K
  GGTATGGGGT GGATGGAGGG GATAGAAAAA GGCCCACCAC CAACCCGTCA TCAAGCTCAA
  CCCAGCCGTC CCTGCCCCTC CTTACCCTAA CATTCAGCCC TTGACAGACT CAGCTTCTAG
  CATCCACCAC ACTCCAGGTT GGGCTGAGAG ATGCAAGCAC TTACCTTGCT CTGTGTGAGT
  TTGTTCTTCT TGTTCAGCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398573150	MGP_WTSI_17_57361454	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259192909					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398573150	MGP_WTSI_17_57361454	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57529031 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Gm65552	predicted gene, 65552	521 bp downstream
Tssr145377	transcription start site region 145377	159 bp upstream
Tssr145378	transcription start site region 145378	1081 bp upstream
Tssr145379	transcription start site region 145379	1162 bp upstream
Tssr145380	transcription start site region 145380	1191 bp upstream
Tssr145381	transcription start site region 145381	1257 bp upstream
Tssr145382	transcription start site region 145382	1787 bp upstream
Tssr145383	transcription start site region 145383	1903 bp upstream
Tssr148934	transcription start site region 148934	1835 bp upstream
Tssr148935	transcription start site region 148935	979 bp upstream
Tssr148936	transcription start site region 148936	958 bp upstream
Tssr148937	transcription start site region 148937	937 bp upstream
Tssr148938	transcription start site region 148938	631 bp upstream
Tssr148939	transcription start site region 148939	102 bp upstream
Tssr148940	transcription start site region 148940	219 bp downstream
Tssr148941	transcription start site region 148941	299 bp downstream
Tssr148942	transcription start site region 148942	800 bp downstream
Tssr148943	transcription start site region 148943	840 bp downstream
Tssr148944	transcription start site region 148944	860 bp downstream
Tssr148945	transcription start site region 148945	888 bp downstream
Tssr148946	transcription start site region 148946	913 bp downstream
Tssr148947	transcription start site region 148947	1152 bp downstream
Tssr148948	transcription start site region 148948	1204 bp downstream
Tssr148949	transcription start site region 148949	1259 bp downstream
Tssr148950	transcription start site region 148950	1824 bp downstream
Tssr148951	transcription start site region 148951	1865 bp downstream
Tssr148952	transcription start site region 148952	1906 bp downstream