rs259195766 SNP Detail

Summary

• ID
  rs259195766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:72775050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTAAAAA TTAGATACTT
  CATATAAAAG ACTGAAACCA ACCTAATTGG AAGCTAAGAG CCTTAGTCTG ACTTGTGGTT
  GTTTCCAGTA CAGGACATCT CACCTAGGGC CCCTTCCCAA AAGAATCTCT TCCTGCGAAA
  ACAAAAATGT CTGAATAAAC TGATCTGGCT CCACCCAGAT GCCCTGTTCT GGGGTGCTAG
  Y
  GTGGTGACCT CTTCCTTCCC TTCCCTTCCC TTCCCTTCCC TTCCCTTCCC TTCCCTTCCC
  TTCCCTTCCC TTCCCTTCCC TTCCCTTCCC TCCCCCTCCC TTGAATGAGT ATGCCCCACC
  CAGGGTCTTT TCTGTAGATG CTAGACAGTA AATAACTCAG GGTATAAAGG GGAGTGGGCT
  CTGCACAGGC ACCGAGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389037592	MGP_WTSI_13_72764379	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259195766					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389037592	MGP_WTSI_13_72764379	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:72775050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5830	CpG island 5830	1447 bp distal
Cpgi5831	CpG island 5831	439 bp proximal
Gm20554	predicted gene, 20554	within coordinates
Irx2	Iroquois homeobox 2	1889 bp upstream
Rr273617	regulatory region 273617	551 bp proximal
Rr281620	regulatory region 281620	within coordinates
Tssr120305	transcription start site region 120305	1855 bp upstream
Tssr120306	transcription start site region 120306	1871 bp upstream
Tssr120307	transcription start site region 120307	1900 bp upstream
Tssr123170	transcription start site region 123170	1554 bp downstream
Tssr123171	transcription start site region 123171	1632 bp downstream
Tssr123172	transcription start site region 123172	1659 bp downstream