rs259198576 SNP Detail

Summary

• ID
  rs259198576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108218773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTCTTG ATTGCTATGA
  TGACTGTCAT CATGCTGGCC AGCCTGTAAT AACATCCTCC TATCTCCACC AATTGCTGGG
  ATTACAGGTG AGAGCCACTA TGTCCCCTGT TAGTTTACTT TTGCTTCTTT CGGAGATCAG
  GTCTGTCCTC AGACTCCTGA TCCACCTGCC TGCCCACTGC CTAAGTGCTG GAAATATGGA
  Y
  ATGGACAACC AAGTATACAC AAAAATATAC ACATTTGTTT TTCCTTTTTT TGACAGAGTT
  TTCTTATGTA GCCCTGGCTG GCCAAGAATT CATTGTATAG ATCATTGTAT AGTCTGGCCT
  TGAACTCACA GATCTGCCTT CCTCCACCTC TGCCTCCTGA GTGCAGAGAT TAAGGGAAAC
  TTTTTCAAAG CAATGTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378865000	MGP_WTSI_9_108243905	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259198576					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378865000	MGP_WTSI_9_108243905	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108218773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	1399 bp distal
Gm57050	predicted gene, 57050	1440 bp upstream
Gpx1	glutathione peroxidase 1	1232 bp downstream
Rr383883	regulatory region 383883	1756 bp downstream
Rr686786	regulatory region 686786	950 bp distal
Rr686787	regulatory region 686787	51 bp proximal
Rr686788	regulatory region 686788	1172 bp proximal
Tssr3010	transcription start site region 3010	1824 bp downstream
Tssr87097	transcription start site region 87097	1654 bp downstream
Tssr87098	transcription start site region 87098	1587 bp downstream
Tssr87099	transcription start site region 87099	1258 bp downstream
Tssr91519	transcription start site region 91519	1681 bp upstream
Tssr91520	transcription start site region 91520	1590 bp upstream
Tssr91521	transcription start site region 91521	1494 bp upstream
Tssr91522	transcription start site region 91522	1418 bp upstream
Tssr91523	transcription start site region 91523	1233 bp upstream