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rs259202312 SNP Detail
Summary
  • ID
    rs259202312
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:52467164 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      AAGGTGAGA ATGTATGAAA GAAAAGAGAA
    AAACAGAATA TCTGTCATTG GTGACCCTGG GCCATTCCTC TCCAGAAGGA AGTATCCCAG
    GGCCCCAGGA GTCTCCCTTC CTAGGGCACT CATCAAGATG ACTCCAGGTT CCCAGACTTG
    Y
    CCCTGGACTG ACCTCTGTGG CTGATGGGCA AACTCAGCCT AAGGGAATCC CTCCACCTTA
    GGCTTTGCAG TGATTCATCA CACCAATGGC TCCCCTGAGA TCCATGGTCA GACTTGCCTG
    TTGTCAGTTT GTTGCTGATG AAATAGTGGC                                 
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss319720170 CHEV_1_52484849 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs259202312 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:52467164 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm69377 predicted gene, 69377 within coordinates
Rr410861 regulatory region 410861 234 bp proximal
Rr410862 regulatory region 410862 1028 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory

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