rs259206986 SNP Detail

Summary

• ID
  rs259206986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67142873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGCTGG AGGACGAGTG
  CTCAGAGCTG AAGAAGGACA TTGACGACCT TGAGCTGACA CTGGCCAAGG TTGAGAAGGA
  GAAGCACGCC ACGGAGAACA AGGTACAACC ACTATTCACT TTCAAGCATT TACAAATACT
  CAAGCCTGAC TCTTAAACCT TAAAATCATG GAACGTGAAA GGGAAAATGT TACAATGTTG
  Y
  CATCTTTTTT ATGGCTGCTG TATTCCCTGT CAGGATGTTG TCCTGAGAAG TTAAATTATC
  ATGTATTTTG GCAAGATGAC ATGTTTTTTT TTTTTTTTTT AATCAACATT CCCATCATCT
  GTCCAAATCT AAAGGTGAAA AACCTGACAG AAGAGATGGC AGGCCTGGAT GAAAATATCG
  CCAAGCTGAC CAAGGAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730811	MGP_WTSI_11_67065549	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259206986					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730811	MGP_WTSI_11_67065549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67142873 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3526	transcription start site region 3526	1670 bp downstream
Tssr3527	transcription start site region 3527	1170 bp upstream
Tssr102187	transcription start site region 102187	1996 bp downstream
Tssr102188	transcription start site region 102188	1709 bp downstream
Tssr102189	transcription start site region 102189	1521 bp downstream
Tssr102190	transcription start site region 102190	1505 bp downstream
Tssr102191	transcription start site region 102191	1484 bp downstream
Tssr102192	transcription start site region 102192	1478 bp downstream
Tssr102193	transcription start site region 102193	1435 bp downstream
Tssr102194	transcription start site region 102194	1293 bp downstream
Tssr102195	transcription start site region 102195	1210 bp downstream
Tssr102196	transcription start site region 102196	1171 bp downstream
Tssr102197	transcription start site region 102197	1127 bp downstream
Tssr102198	transcription start site region 102198	1066 bp downstream
Tssr102199	transcription start site region 102199	312 bp downstream
Tssr102200	transcription start site region 102200	161 bp downstream
Tssr102201	transcription start site region 102201	1428 bp upstream
Tssr102202	transcription start site region 102202	1950 bp upstream
Tssr108528	transcription start site region 108528	1403 bp upstream
Tssr108529	transcription start site region 108529	1089 bp upstream
Tssr108530	transcription start site region 108530	1087 bp upstream
Tssr108531	transcription start site region 108531	1059 bp upstream
Tssr108532	transcription start site region 108532	289 bp upstream
Tssr108533	transcription start site region 108533	137 bp upstream
Tssr108534	transcription start site region 108534	549 bp downstream
Tssr108535	transcription start site region 108535	645 bp downstream
Tssr108536	transcription start site region 108536	1997 bp downstream