rs259208788 SNP Detail

Summary

• ID
  rs259208788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12656491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAAGCCC AGTCTGCGCC
  CTCAGGTGAG GCTGCGGAGG GACACGGAGT TCAGAAGAGG TGACCATGAG TGTTCTAAGG
  CACATCTGGG GGGCCGGAGG CCGAACCTGA AGCCTGGGCG TGACCGCTTG GATCTCACCG
  TTTCTCTGCG AAAAAGGGTG CCTAGGGAAA CTCGGCACGG GCCGAGTTAG TCTTCGCCTC
  Y
  TGTTTGCACT GTTTTGACTT CATACTTTGC ACACACGGGA CTCCAGGGAA ATCACTTGGG
  TCATATACCA TAAACATAAA TCTAGGTTTG CTTAGTTTTG TGATGACTCT TTTGCTCAGT
  ACACGTTCTA AGTGCACAAC GGAAATCTGA TGGGAGCTGA TGAGTATACG GCTTCATGAA
  CCATCATACT GTGGTCCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322106845	CHEV_7_13507913	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259208788					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12656491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	within coordinates
Gm57203	predicted gene, 57203	437 bp upstream
Rps5	ribosomal protein S5	within coordinates
Rr368230	regulatory region 368230	316 bp downstream
Rr642402	regulatory region 642402	474 bp distal
Rr642403	regulatory region 642403	264 bp distal
Rr642404	regulatory region 642404	167 bp distal
Tssr64485	transcription start site region 64485	244 bp downstream
Tssr64486	transcription start site region 64486	390 bp upstream
Tssr70626	transcription start site region 70626	468 bp upstream