rs259209536 SNP Detail

Summary

• ID
  rs259209536
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70885876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTCCCAAG TGCGGCTGAG
  GGAAAGCCAC GGGGCGTACC TTTGGAGGGT CCCACTGGCC ACAACGCCCC TCTGGACGCG
  TGGCCAGAGC CTTGCAGGGC CAAAGGAGGG GTTGGCAGTC GTCCCACGAC CAGGGCAGAA
  AGGGACTGCT TCCTGGGACA CACAGGTGAA GCGACACCAC CAGGTGGCTG CACAGCACCC
  M
  CCAAAGCTAT CCAGGTTTAC CGCGTGCAGC CCGGAAGGCT ACCCGACCCA CTGCGCAGCC
  CTACGGCGCA GCCTATTAGG GCCAGGAGAG GCGGGCTAGG GGCAGGGAGG GGTGGGGCGG
  GGCCAGGCCA GCCCTCGCTC TGCCTGACGG GAATTGTAGT TCTGAAAAAG AAGCCATAGG
  GGCGGAAAAG GCCAAGGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354406974	MGP_WTSI_2_70893589	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259209536					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354406974	MGP_WTSI_2_70893589	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70885876 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			within coordinates
Dcaf17	DDB1 and CUL4 associated factor 17			Intron
Mettl8	methyltransferase 8, methylcytidine			mRNA-UTR
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			within coordinates
Rr558662	regulatory region 558662			within coordinates
Rr558663	regulatory region 558663			30 bp proximal
Rr558664	regulatory region 558664			205 bp proximal
Rr558665	regulatory region 558665			732 bp proximal
Tssr18237	transcription start site region 18237			199 bp upstream
Tssr24467	transcription start site region 24467			19 bp upstream
Tssr24468	transcription start site region 24468			3 bp upstream
Tssr24469	transcription start site region 24469			2 bp downstream