rs259210016 SNP Detail

Summary

• ID
  rs259210016
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:93885985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTACCGC GTCGGCCGCT
  CATCCTCGAT CCCAGGCCCT GACACTCAAC CTCGGAGCGG GTAGGCGCGA CGCTTCTCGT
  GCACTCACCA CGGCTTACCT TACCCCGGGA GCGCGCCGGT CTCTCGTGGG GACAGTCCCT
  GGAGGTGGCG ACGCGGAGGC GCGCCGGCGA CTCACGGGCC GCGGCGGGGG TCGGAGGCGA
  S
  GCTCACCGCC CCCGCCACGG CCCCTCCCCT CCCCCCTCCC GCGGTCCCGC GCAGCCCAGT
  CTCCGCCCGA AGGCGGGTCT GCCATAAACA AACGCAGCTC GGTCACACGT GGACCGCGGA
  GCAACTGCGC CCCGCCACCG ATCGCGGGCT CCGGACGACC GGACTAAGGA AGCCGGAACC
  GCCGGGGAGG GCAGGAAAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss397391704	MGP_WTSI_16_94085371	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs259210016					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397391704	MGP_WTSI_16_94085371	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93885985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	within coordinates
Cpgi8494	CpG island 8494	1574 bp proximal
Gm31175	predicted gene, 31175	within coordinates
Gm49620	predicted gene, 49620	1260 bp upstream
Gm60844	predicted gene, 60844	24 bp upstream
Rr520040	regulatory region 520040	1271 bp distal
Rr520041	regulatory region 520041	770 bp distal
Rr520042	regulatory region 520042	185 bp distal
Rr520043	regulatory region 520043	35 bp distal
Rr520044	regulatory region 520044	within coordinates
Rr520045	regulatory region 520045	1634 bp proximal
Sim2	single-minded family bHLH transcription factor 2	mRNA-UTR
Tssr139539	transcription start site region 139539	192 bp downstream
Tssr139540	transcription start site region 139540	100 bp upstream