rs259211381 SNP Detail

Summary

• ID
  rs259211381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123481528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGGAAC TACCTACATA
  AACCAGGTTG GTCTTGAACC ACAGATCTCT ACCTGCTTCT GCCTGGAATT AAAGGAGTGG
  GCTACCACAT CTGATTGTTG TTCTTATTTT TAAATTTTCG CTTTAGGACC GTGCGTTTAA
  AGTGGTTAAA AGAAGCCTGG GGGAAATTTC CCCAGATTCT CACACCCATT TCCCCACTAG
  Y
  TCCCTCTACC AAACCCCTGC AACCCCCCCA GACTTCAGGG GGAGATGCTT GGTACTAGAA
  TCATGGCAGT CACAGATGAA GGTCACTGCT GCAACCTTCA ATAACTCCTT GACTCAGTTT
  GTCCATCTGT GAAATGACTG ATGTTGCGCT AGTTCCTCTC CAGGTAGCAG CTCTCTCACT
  TCAGGTCATC TCTTTTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366537248	MGP_WTSI_5_123793474	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259211381					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366537248	MGP_WTSI_5_123793474	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123481528 () rs orientation: forward

Symbol	Name	Function Class
Bcl7a	B cell CLL/lymphoma 7A	983 bp upstream
Cpgi16582	CpG island 16582	514 bp proximal
Gm15860	predicted gene 15860	within coordinates
Rr367948	regulatory region 367948	1215 bp upstream
Rr620171	regulatory region 620171	110 bp proximal
Rr620172	regulatory region 620172	393 bp proximal
Rr620173	regulatory region 620173	860 bp proximal
Tssr1629	transcription start site region 1629	1464 bp upstream
Tssr48785	transcription start site region 48785	491 bp upstream
Tssr48786	transcription start site region 48786	871 bp upstream
Tssr48787	transcription start site region 48787	975 bp upstream
Tssr48788	transcription start site region 48788	1117 bp upstream
Tssr48789	transcription start site region 48789	1201 bp upstream