rs259215590 SNP Detail

Summary

• ID
  rs259215590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30510964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATTTGGA GATGAACTAA
  CTTGACAATT GTTCCAAGAG AACAGGTTCA ATTCTGTCAG TATACAGTCA AATCCAAAAT
  GACAGCTCAT TTCTCCACAT GTAAGTCTAT CTAAAAAGGC CCAAAGATTT ATTTATTATT
  GTACATAAGT ACAATGTAGC TGTCTTCTGA CACACCAGGA GAGGACGTCG GATCTCAGTA
  Y
  AGGTGGTTGT GAGCCACCAT GCAGTTGCTG GGATTTGAAC TTAGGACCCT CAGAAGAGTA
  GTCAGTGCTC CTACTTGCTG AGCCATCTCA CCAGCCCTTG GTGTGGTTTC TCTCTGTCTC
  TCTGTCTCTC TGTCTTTCTG TCTCTCCCTC CCTCTCCCTC TCCCTCTCTC TCCCGCTCCC
  TCCCTCTCTA TCTCTTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367835015	MGP_WTSI_6_30460965	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259215590					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367835015	MGP_WTSI_6_30460965	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30510964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17257	CpG island 17257	1033 bp distal
Rr134712	regulatory region 134712	364 bp distal
Rr146079	regulatory region 146079	363 bp distal
Rr379134	regulatory region 379134	264 bp downstream
Ssmem1	serine-rich single-pass membrane protein 1	within coordinates
Tmem209	transmembrane protein 209	1178 bp upstream
Tssr55341	transcription start site region 55341	1117 bp downstream
Tssr55342	transcription start site region 55342	1076 bp downstream
Tssr55343	transcription start site region 55343	1318 bp upstream
Tssr55344	transcription start site region 55344	1329 bp upstream
Tssr55345	transcription start site region 55345	1357 bp upstream
Tssr55346	transcription start site region 55346	1375 bp upstream
Tssr60120	transcription start site region 60120	1232 bp upstream
Tssr60121	transcription start site region 60121	1208 bp upstream