rs259218522 SNP Detail

Summary

• ID
  rs259218522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121478025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTACGAGC CGTGCATCGT
  GGTGTCGGAC GCCGAGAAGC ACACGTTCAA GTACGTGGTG CTCAGCGACC GGCTCATCTA
  CCTGACCGAG AACCCGCCCA AGTCCATCCG GCGGGTAGTG GCTTTGCGGG ACGTCGTGGC
  CATTGACCTG GTGAGGATTG CGGGCGGGCA GGCTCCTTCC TAAACTCTCG CATCCCCCTC
  Y
  GGCGCTGGAG AAAGGAGGAA CACCTTCCCC ATCCCGCCCC GGACTTCATC TCTTGTCAGT
  GAAAGCAGCT GCGTGGAAAA GCTGGGGTTT GATGTAGAAT TTCAAATAAA CAAGTTCTCC
  CGTTCTCCTC CTGAAAACCC TCTGCTCCCA AATTGGGCAA CAGGTTTGAC AACCAGTCTC
  GCTATAGTGA CAAGCCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513969	CHEV_10_121079176	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259218522					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121478025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2291	CpG island 2291	within coordinates
D930020B18Rik	RIKEN cDNA D930020B18 gene	within coordinates
Rr440257	regulatory region 440257	1320 bp distal
Rr440258	regulatory region 440258	1508 bp distal
Rr440259	regulatory region 440259	316 bp distal