rs259219563 SNP Detail

Summary

• ID
  rs259219563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:84566129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGCAGTT AACTCCAATG
  AAATTAACAT GGGTATAATA ATGTCAGAGC TTTAACATTT TTAATTATTT TAATTGCCCG
  TGGTTCATTA CACTGAAAGA ATAACAAATA ACCAGGAAAA CGCAGCTGAA GGGCATCTCC
  GTTTTTCTGT GCTTCCCCTG TGTTGTGTCA ACCTGCTTTA ACATCCATCT TCAATTTACT
  Y
  GTTCATTGTT TCAAAAAGAT ACACAAGAAG GGGAATTTTA GAAGGCCAGC TCTCAATATC
  AGAATACAAA GTATCTCCCA AAATGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTTTTA AAGAAGAAAG GCATTTCATT TAATTCCGGC CTTTGATAAC TACTTTTAAG
  ACTGGGCACC TGCTCACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365712086	MGP_WTSI_5_84847295	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259219563					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365712086	MGP_WTSI_5_84847295	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:84566129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16022	CpG island 16022	1488 bp distal
Cpgi16023	CpG island 16023	431 bp distal
Epha5	Eph receptor A5	888 bp upstream
Gm42163	predicted gene, 42163	within coordinates
Gm71976	predicted gene, 71976	within coordinates
Tssr51507	transcription start site region 51507	1151 bp upstream
Tssr51508	transcription start site region 51508	1120 bp upstream
Tssr51509	transcription start site region 51509	961 bp upstream
Tssr51510	transcription start site region 51510	933 bp upstream
Tssr51511	transcription start site region 51511	881 bp upstream
Tssr51512	transcription start site region 51512	870 bp upstream
Tssr51513	transcription start site region 51513	781 bp upstream