rs259221426 SNP Detail

Summary

• ID
  rs259221426
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7280995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGCGGTCG GAAGCGGACT
  CGGGCTTGGT CCCCGGGGAG AAGGAACGAG GGAGAAGGAG GGAGAAGGAA GGAGAAGGAA
  GGAGAAGGAA GGAGAAGGGA GAACCGGGGG CTGCGGGACT CGTGGAAGCC GGGATGGGTC
  CCTCGATGGC GGACGCCGAC GCCAGGCAGC CCCGGGTGGA AGGGAGGAGG AGGAGGAGGA
  G
  AGAGAGACTT AGAGTCAGAC AGAGGGACAG AGAGAGAGAC TTAGACACAG AGACAGAGAG
  ACAGAGAGAG GCTCTGTCCC TGCACTCCTA CAGGTACAAC CTGGAGCAGC GGACGCGGAC
  CTGAACCCCC GTCTGCCCGG GGACGCCGCC GCCACGGCCA CACCGCTCGT CTGGAACCAC
  GGCTGGCCTT CGGGTCCCAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J
ss370610655	MGP_WTSI_7_7230707	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J
rs259221426					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370610655	MGP_WTSI_7_7230707	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7280995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	within coordinates
Gm45844	predicted gene 45844	within coordinates
Tssr64464	transcription start site region 64464	within coordinates
Tssr70610	transcription start site region 70610	33 bp downstream
Tssr70611	transcription start site region 70611	74 bp downstream