rs259222742 SNP Detail

Summary

• ID
  rs259222742
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10159347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACTACAT ACAAAGAAGG
  CAAGGCTGGC CTTTCTTCGT TTTATTTTTG TTTTAAAATC GTTTTTAAAA TTGCATTTAT
  TTATTTATTT ACGTGTGTGT GTGTGTGTGT GTGCTGCCAT GAATTGCAGG CAATGTAGGC
  TAGAAGAAAA ACTTGTGGAA GTCAGTACTC TCCTTCCATC TTGTGGGTCC CAGGGATCCA
  W
  TTCAGGTCAC TGGGTTTTGC ATCAGGCAAC TGTTCCTCCT GAACCATAGA GCTATCATTA
  GTATTGTTAT CATCATCATC ATCACCACCA CCATCATCAT CATCATCACA TTTTAGTTAG
  TGCATGTGTG TGTGTGCATG CGTGCATGTG TTAATTGTGT GTGTGTGTTC CTAAGTACTA
  TATTCTTGTA AGTCAAAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401724146	MGP_WTSI_19_10256473	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259222742					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401724146	MGP_WTSI_19_10256473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10159347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10600	CpG island 10600	221 bp proximal
Fads1	fatty acid desaturase 1	905 bp upstream
Gm59251	predicted gene, 59251	within coordinates
Rr356592	regulatory region 356592	1547 bp distal
Rr362958	regulatory region 362958	253 bp proximal
Rr363808	regulatory region 363808	1748 bp distal
Tssr155024	transcription start site region 155024	885 bp upstream
Tssr155025	transcription start site region 155025	902 bp upstream
Tssr155026	transcription start site region 155026	923 bp upstream
Tssr155027	transcription start site region 155027	938 bp upstream
Tssr155028	transcription start site region 155028	1011 bp upstream
Tssr155029	transcription start site region 155029	1024 bp upstream
Tssr155030	transcription start site region 155030	1054 bp upstream
Tssr155031	transcription start site region 155031	1164 bp upstream
Tssr155032	transcription start site region 155032	1539 bp upstream
Tssr158164	transcription start site region 158164	1473 bp downstream