rs259236298 SNP Detail

Summary

• ID
  rs259236298
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89814249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATACATA TTGCTGTTTT
  ATTGGACGGT GCTTTTATAT TTCTTTCAAG ATTGGCACAT ATGAGATACA CTTGTCCTAA
  ATATTATGCA GCTACAGGTT TTACAAGTAT AACAATAGCA ATTTCATTTG ATTTGAGGGA
  ATTTATGGTT CTATTATTTG TGCTTGAGTT CTGAGATATG CCTTCCCCCC CCCCCCCCAC
  M
  CACACACACA CACACAATTT TTAACCTAAA ACCAGAGTTT CTCTTTAGTC CTGGCTGTCC
  TGGAATTTAC TCTATAGACC AGGGTGACCT TGAAACTCAG AGATCTGAAT GCCTATGCCT
  CCCAAGTGTT AGAATTAAAA GGTGTGTACC ACCACTTCCT GGTGAGTTCT GAGATTCTGG
  CTGTGAAAGA AACATTTTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322314347	CHEV_7_97313551	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259236298					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89814249 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67720	transcription start site region 67720	1967 bp downstream
Tssr67721	transcription start site region 67721	1884 bp downstream
Tssr67722	transcription start site region 67722	946 bp downstream
Tssr67723	transcription start site region 67723	464 bp upstream
Tssr67724	transcription start site region 67724	1011 bp upstream
Tssr67725	transcription start site region 67725	1056 bp upstream
Tssr67726	transcription start site region 67726	1069 bp upstream
Tssr67727	transcription start site region 67727	1133 bp upstream