rs259238728 SNP Detail

Summary

• ID
  rs259238728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119798762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGCCAT CCTGGTGCAT
  GTAAGTGCTC ATTCGCTGCG GAGCGGAGGC AGGGGGATCG CCCTCCACAG CAAAGCAAGC
  AAGCTTGGGC TGCATAAGAG CTTGTCTCAA AAAGTGTGTA TGTGTGTGTC AGTGTGTGTG
  TTGAGTGTGT GGGTGTGGTG TGTATGTACT GGGATAACTT GCTATAATGC CAGTACTTGG
  R
  AGATAGAGGC AAGAGGATCA AGGGCACCCT CAGCTACCCG GTAAGAGTTT TCAAAGTTGA
  GTTACCTGGA GGGCTAAGTT TTTCTTCTTG GGCTGGGGCT AGAACCTAGG GCTTGGGTGC
  CCAGCTGGCA CTCCAGCCTC AACCTGTCCT TTCTGTAACA CTGCTGTCGA TGTCACATGC
  ACTGATCTAA AACACTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323223751	CHEV_9_119878814	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259238728					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119798762 () rs orientation: forward

Symbol	Name	Function Class
Csrnp1	cysteine-serine-rich nuclear protein 1	1467 bp downstream
Rr688588	regulatory region 688588	330 bp proximal
Rr688589	regulatory region 688589	1222 bp proximal
Ttc21a	tetratricopeptide repeat domain 21A	1903 bp downstream