rs259240479 SNP Detail

Summary

• ID
  rs259240479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132458988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCAACAC CTTCTTCTCT
  TGGGGCCTGC CTGTAATAAC TCTCCTTCGC AGTCATCTGA GCTGTACTCA AGATGATACA
  ATTGTTCAGG CAAAATGCAA ACATTCAAGA GGTCCCTCCC CGCAAGCTGG AGACTATATA
  CAGCTTTCCC AAGATCTGAG ACTTCCACAA GATTCCGGAT CCGGCCACCC TAGCCCAGCC
  Y
  CACCCACACC ATGAAGCCCT GCCTTCATCA CAAGATTCTG AGCCCTTGAT TTCGCTTTCT
  CCTATCTAAC AACCCAAGGG ACTAGTCACA GTTTGGGGGC GGGGGAGAGG CGGGGAAGAA
  AAAGTTCTCA GGCCAGCACT TGCGCCAGGG ATTGTCTGTC TCACTGTCCT CACTTTAGAC
  TGACCCTGGG TCCTTCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321335961	CHEV_4_132287592	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259240479					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132458988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	524 bp proximal
Cpgi14970	CpG island 14970	1780 bp proximal
Rr398540	regulatory region 398540	880 bp upstream
Rr601049	regulatory region 601049	757 bp proximal
Rr601050	regulatory region 601050	842 bp proximal
Rr601051	regulatory region 601051	859 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	1289 bp downstream
Tssr39417	transcription start site region 39417	149 bp upstream
Tssr43695	transcription start site region 43695	33 bp downstream
Tssr43696	transcription start site region 43696	750 bp downstream
Tssr43697	transcription start site region 43697	837 bp downstream
Tssr43698	transcription start site region 43698	888 bp downstream
Xkr8	X-linked Kx blood group related 8	within coordinates