rs259246819 SNP Detail

Summary

• ID
  rs259246819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8728568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCA AATCAAAATT TTAAAAATGA
  R
  TGAGAAGGCA GAGAAGCCCT TTTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MOLF/EiJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SPRET/EiJ
ss925279442	MGP_WTSI_3_8663508_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	G	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MOLF/EiJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SPRET/EiJ
rs259246819					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925279442	MGP_WTSI_3_8663508_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8728568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12961	CpG island 12961	1014 bp proximal
Hey1	hairy/enhancer-of-split related with YRPW motif 1	mRNA-UTR
Rr573304	regulatory region 573304	620 bp distal
Rr573305	regulatory region 573305	1180 bp proximal