rs259254856 SNP Detail

Summary

• ID
  rs259254856
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149982222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCATTTT TTAAAATGTT
  GTCTTGAGAC AAATAATTTG AAATTTCTAA ATTGGGAGTT TGAATCACTT TTGAAAGCTC
  TTACTTTCTT AAGCTGTCAG GTTTGTACCG ACATGGAGTA AACAGCTATC ATAAACGTAA
  ATCTCCAAAA CTAGTAGAAA TTATGTCATG ATTGATGGTT AAGATACCAT GTCAGGGATT
  K
  TCTTTTCTTA GAAGTAGTGA AAGCTACTTA CTATGACAAT CAGACCTTCC TTGTATGTCA
  AAATGCTGGT GTGGAAGGTG GTGGAGCCCG TGCTGCTCTG TCTTAACTAT GAGTGTGAGC
  TTTAAAGCTC GTTGATGAGT GGTAGCCAGC AAAGCCTAGA GCAACAAAAG CTTCTACAAA
  GGAACTAACC AAGAACAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351888778	MGP_WTSI_1_151953601	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259254856					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888778	MGP_WTSI_1_151953601	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149982222 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1822 bp distal
Rr24983	regulatory region 24983	1926 bp distal
Tssr9262	transcription start site region 9262	1985 bp downstream
Tssr9263	transcription start site region 9263	1973 bp downstream
Tssr9264	transcription start site region 9264	1924 bp downstream
Tssr9265	transcription start site region 9265	1897 bp downstream
Tssr9266	transcription start site region 9266	1808 bp downstream
Tssr9267	transcription start site region 9267	1473 bp downstream
Tssr9268	transcription start site region 9268	1403 bp downstream
Tssr9269	transcription start site region 9269	1066 bp downstream
Tssr9270	transcription start site region 9270	1035 bp downstream
Tssr9271	transcription start site region 9271	1012 bp downstream
Tssr9272	transcription start site region 9272	981 bp downstream
Tssr9273	transcription start site region 9273	937 bp downstream
Tssr9274	transcription start site region 9274	917 bp downstream
Tssr9275	transcription start site region 9275	885 bp downstream
Tssr9276	transcription start site region 9276	871 bp downstream
Tssr9277	transcription start site region 9277	815 bp downstream
Tssr9278	transcription start site region 9278	794 bp downstream
Tssr9279	transcription start site region 9279	776 bp downstream
Tssr9280	transcription start site region 9280	676 bp downstream
Tssr9281	transcription start site region 9281	656 bp downstream
Tssr9282	transcription start site region 9282	622 bp downstream
Tssr9283	transcription start site region 9283	607 bp downstream
Tssr9284	transcription start site region 9284	595 bp downstream
Tssr9285	transcription start site region 9285	581 bp downstream
Tssr9286	transcription start site region 9286	502 bp downstream
Tssr9287	transcription start site region 9287	5 bp upstream
Tssr9288	transcription start site region 9288	121 bp upstream
Tssr9289	transcription start site region 9289	138 bp upstream
Tssr9290	transcription start site region 9290	294 bp upstream
Tssr9291	transcription start site region 9291	340 bp upstream
Tssr9292	transcription start site region 9292	459 bp upstream
Tssr9293	transcription start site region 9293	488 bp upstream
Tssr9294	transcription start site region 9294	508 bp upstream
Tssr9295	transcription start site region 9295	524 bp upstream
Tssr9296	transcription start site region 9296	546 bp upstream
Tssr9297	transcription start site region 9297	555 bp upstream
Tssr9298	transcription start site region 9298	581 bp upstream
Tssr9299	transcription start site region 9299	603 bp upstream
Tssr9300	transcription start site region 9300	620 bp upstream
Tssr9301	transcription start site region 9301	754 bp upstream
Tssr9302	transcription start site region 9302	784 bp upstream
Tssr9303	transcription start site region 9303	846 bp upstream
Tssr9304	transcription start site region 9304	870 bp upstream
Tssr9305	transcription start site region 9305	888 bp upstream
Tssr9306	transcription start site region 9306	900 bp upstream
Tssr9307	transcription start site region 9307	904 bp upstream
Tssr9308	transcription start site region 9308	937 bp upstream
Tssr9309	transcription start site region 9309	951 bp upstream
Tssr9310	transcription start site region 9310	982 bp upstream
Tssr9311	transcription start site region 9311	994 bp upstream
Tssr9312	transcription start site region 9312	1019 bp upstream
Tssr9313	transcription start site region 9313	1039 bp upstream
Tssr9314	transcription start site region 9314	1050 bp upstream
Tssr9315	transcription start site region 9315	1144 bp upstream
Tssr9316	transcription start site region 9316	1327 bp upstream
Tssr9317	transcription start site region 9317	1604 bp upstream