rs259258379 SNP Detail

Summary

• ID
  rs259258379
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143117788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACCATGA TTTTATTTCA
  TCCATAATTT ATAAGTAATG ATCCATGATT TTCCTTATAG ACTGAAGTAT CCAAGAGTAA
  GATAAATAGC TGCTGCCAGG CAGTGGTGGC ACACACCTTT AATCCCAGCC CTCAGGAGGC
  AGAGACAGGC GGATTTCTGA GTTGGAGGCC AGCCTGGTCT ATGGAGTGAG TTCCAGGACA
  S
  CCAGGGCTAC ACAGAGAAAC CCTGTCTCGA AAAACAAAAA AACCAAAAAC AAAAAAGATA
  AAAAAGCTTT ACATCAAAAC ATCTCTATAA AGTCCAGTTT TTTCTTTATT TACAGTATAC
  CTTTATTGTT TTTTGTAATT AGACCTGTGT AGATATTTAA TTTAGTGTGA AAACATTGTA
  CAAATGGAAA AATACAAGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404807832	MGP_WTSI_X_140769335	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259258379					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404807832	MGP_WTSI_X_140769335	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143117788 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	195 bp upstream
Tssr162278	transcription start site region 162278	995 bp upstream
Tssr162279	transcription start site region 162279	1111 bp upstream
Tssr162280	transcription start site region 162280	1144 bp upstream
Tssr162281	transcription start site region 162281	1224 bp upstream
Tssr162282	transcription start site region 162282	1255 bp upstream
Tssr162283	transcription start site region 162283	1273 bp upstream
Tssr162284	transcription start site region 162284	1287 bp upstream
Tssr162285	transcription start site region 162285	1303 bp upstream
Tssr162286	transcription start site region 162286	1332 bp upstream
Tssr162287	transcription start site region 162287	1355 bp upstream
Tssr162288	transcription start site region 162288	1372 bp upstream
Tssr162289	transcription start site region 162289	1396 bp upstream
Tssr162290	transcription start site region 162290	1420 bp upstream
Tssr162291	transcription start site region 162291	1902 bp upstream