rs259263664 SNP Detail

Summary

• ID
  rs259263664
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60701510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGGTGTT TCTGGTCCAG
  CAACTGCCTG GCTCAATTAA ACACATTTGT GCTTGCTTCA GCTAACCAAA GGTCACCTAA
  CTTCCAGACC TTGAAATAGA GGCACTGGGC TAAGAACGCT ACAAGCCAAC CTGTCCCCTA
  GATAGAGTAA CGCACTGCAG ATAATCAGGG TTGTACTAGT AAATCAAAAG CAGTGATTAC
  W
  GACAAACCTC GGAAGCTTCG TTAACATGTA TAAACCAAGG GGTTCCATCC CAGCACCACA
  TGAACCGAGA GCGATAGCTC TTACTGGTGA GGTGGAGGCA GAACCATTAG AAGTTCAAGG
  TCATCCTTGG CTACACATCA AGTTCGAGGA CAGCATGTGT GACACTCACA CCTCAAACAA
  AACAAAAAGA AACAATCGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383571579	MGP_WTSI_11_60624186	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259263664					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383571579	MGP_WTSI_11_60624186	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60701510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	206 bp proximal
Gm74448	predicted gene, 74448	509 bp upstream
Rr402613	regulatory region 402613	481 bp upstream
Rr448485	regulatory region 448485	1668 bp distal
Rr448486	regulatory region 448486	19 bp proximal
Rr448487	regulatory region 448487	571 bp proximal
Shmt1	serine hydroxymethyltransferase 1 (soluble)	within coordinates
Tssr108307	transcription start site region 108307	1854 bp upstream
Tssr108308	transcription start site region 108308	1809 bp upstream
Tssr108309	transcription start site region 108309	340 bp downstream
Tssr108310	transcription start site region 108310	421 bp downstream
Tssr108311	transcription start site region 108311	544 bp downstream
Tssr108312	transcription start site region 108312	571 bp downstream