rs259268527 SNP Detail

Summary

• ID
  rs259268527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32125646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCACTAG CTTTTAAAGC
  CACATACATA CCTCAGGTTT CCAGCAAGCA ACACAATTTC CTCCTGAAGC TGAGTGCCCA
  CGAGCTGTCC TGAAGCACCA GCATGACTTA CATGATCAGA CTAAACTTGG AACCCAAAGA
  GCTCGCTCTC CAATCTTCTG GCGCCCTTTC TTTGCAGGAA CTTGGGTAGA CTATGCTTAA
  R
  CGATGAACAA ACAATTCCGT GCACTCTTGA CTAATGTATT TTATATGTAT CTGTGGTAAC
  TTGACTGCCT GGTGCCAGAT TCTCTGGAAT TGCGGTTCCA GATGATTCTG AGCTGTCATG
  TGGATGCTGG AAATGGAATC AAGGACCTCT TTTTTTGTTT TTGTTTGTTT TGTTTTCGAG
  ACAGGGTTTC TCTGTATATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353553892	MGP_WTSI_2_32091154	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259268527					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353553892	MGP_WTSI_2_32091154	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32125646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11499	CpG island 11499	549 bp proximal
Gm13610	predicted gene 13610	within coordinates
Pomt1	protein-O-mannosyltransferase 1	956 bp upstream
Prrc2b	proline-rich coiled-coil 2B	1097 bp downstream
Rr554847	regulatory region 554847	227 bp proximal
Rr554848	regulatory region 554848	750 bp proximal
Rr554849	regulatory region 554849	1770 bp proximal
Tssr17254	transcription start site region 17254	945 bp upstream
Tssr17255	transcription start site region 17255	967 bp upstream
Tssr17256	transcription start site region 17256	997 bp upstream
Tssr17257	transcription start site region 17257	1663 bp upstream
Tssr23466	transcription start site region 23466	717 bp downstream
Tssr23467	transcription start site region 23467	731 bp downstream
Tssr23468	transcription start site region 23468	743 bp downstream